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The "Waiting For" list in GTD is typically used when you're waiting on someone else to finish something you've delegated. You can also use it to indicate you're waiting on yourself to finish something. Then before consulting your "Actions" list to find a new "Next Action", check your "Waiting" list. You may find some tasks can be moved from "Waiting" to ...

I use MyLifeOrganized for such things and it has built in dependency tracking along with hierarchy (if parent task has incomplete child it will not be shown in TODO list unless it is compleated), tags and much more. Actually it allows to fully implement GTD (at least in my case). By the way "brainstorming" is only one (first) part of GTD process and it is ...